commit 7d6602657d2e34c48104bdc4aef3c0682d0877aa
Author: Klementy Shchetynsky <kleshc@cmm0985.ad.cmm.se>
Date:   Wed Dec 10 14:02:50 2025 +0100

    Some changes

diff --git a/README.txt b/README.txt
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+This is a placeholder README for the project BioHub.
diff --git a/src/MAIN.qmd b/src/MAIN.qmd
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+---
+title: "BioHub"
+author: "Klementy Shchetynsky"
+date: "2025-12-10"
+output_format: html
+execute:
+ cache: false 
+editor: 
+  markdown: 
+    wrap: 72
+---
+
+# Purpose
+
+------------------------------------------------------------------------
+
+# Setup
+
+*+--*
+
+```{bash}
+ls -l
+```
+
+## Project initialization: Building directory structure
+
+```{r}
+#| label: initiate_project
+#| eval: false
+
+##############################
+myProjName <- "BioHub"
+myProjPath <- "~/Desktop/dev/"
+##############################
+
+
+### Building directory structure
+source(paste0(myProjPath,"PROJINIT/projinit.R"))
+projinit(myProjPath, myProjName)
+
+```
+
+> \[!HINT\] Make sure to :saveas this .qmd into the project's "src/"
+> directory!
+
+## Libraries and environment
+
+#### Graphic output device setup
+
++--
+
+```{r}
+#| label: graph_out
+#| message: false
+#| eval: false
+
+library(httpgd)
+hgd()
+hgd_browse()
+### hgd_close()
+
+```
+
+> \[!NOTE\] The `httpgd` package uses default browser as graphics
+> device.
+
+--+ \#### Library loading
+
++--
+
+```{r}
+#| label: libs
+#| message: false
+### General libraries
+
+library(ggplot2)
+library(tidyverse)
+library(data.table)
+library(quarto)
+library(cowplot)
+
+```
+
+#### Project-spedific libraries
+
+```{r}
+#| label: proj_libs
+#| message: false
+#| eval: true
+
+```
+
+--+
+
+*--+* \# Data prep
+
++--
+
+--+ \# Analysis
+
++--
+
+--+ \# Plotting
+
++--
+
+--+ \# Embedded graphics
+
++-- :::{layout-ncol=2}
+
+:::
+
+--+ \# MISC
+
++--
+
+--+